Harvard Online Computational Biology Textbook

Welcome to the Harvard Computational Biology Textbook! This online textbook is a collaborative effort between experts and students at Harvard University and its affiliated institutions. If you have any comments or suggestions please contact Arjun (Raj) Manrai at manrai@fas.harvard.edu

Table of Contents

1. Introduction
1. Basic Molecular Biology
2. Basic Python
3. Basic HTML
2. Sequence Alignment
1. Pairwise Sequence Alignment
2. Fast Sequence Similarity Search Algorithms
3. Multiple Sequence Alignment
4. Hidden Markov Model
5. Genome Sequencing and Assembly
3. Gene Expression
1. Gene Expression Experiments
2. Data Normalization
3. Gene Expression Index
4. Differential Gene Expression
5. Gene Ontology
6. Microarray Clustering Methods
7. Microarray Classification Methods
4. Transcriptional Regulation
1. RNA Folding
2. Transcription Factor Motif Finding
3. ChIP on chip
4. Comparitive Genomics
5. Transcription Regluatory Network
6. ChIP-chip on Genome Tiling Microarrays
7. siRNA and miRNA
5. Proteomics
1. Protein Structure Prediction
2. Mass Spectrophotometry
3. Protein Interaction Networks

Original Intro