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on March 18, 2008 at 10:47:36 pm
 

Online Computational Biology Textbook

 

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  1. Introduction and Basic Molecular Biology
  2. Basic Tools
    1. Basic HTML
    2. Basic Python
    3. Basic R
    4. Basic Bioconductor
  3. Literature Retrieval and Mining
  4. Sequence Alignment
    1. Pairwise Sequence Alignment and Substitution Matrices Ethan Karp Pairwise Sequence Alignment
    2. Fast Sequence Similarity Search Algorithms Alana Mendelsohn Substitution Matrices and Fast Sequence Similarity Search Algorithms
    3. Multiple Sequence Alignment And Protein Motifs Jack Allen Multiple Sequence Alignment
    4. Hidden Markov Model
    5. Genome Sequencing and Annotation David Robinson Genome Sequencing and Assembly
  5. Gene Expression
    1. Gene Expression Microarrays and Experiments
    2. Microarray Normalization and Gene Expression Index Pan-Pan Jiang
    3. Differential Gene Expression and Hypothesis Testing
    4. Microarray Clustering Methods and Gene Ontology
    5. Microarray Dimension Reduction Techniques Meng Xiao He + Helen Yang
    6. Microarray Classification Methods Amy Chen
  6. Transcriptional Regulation
    1. Transcription Regulation and Transcription Factor Motif Finding
    2. System biology of transcription regulation
    3. Expectation Maximization and Gibbs Sampling Nealia kuan
    4. Phylogenetic Trees and Comparative Genomics Daniel Boada Comparative Genomics and Phylogenetic trees
    5. ChIP-on-chip and Genome Tiling Microarrays Xiaohua Shen + Bryan Chang
    6. Epigenetic regulation Jacob Carlson + Josh Paulk + Linjiao Luo
    7. Transcription Regluatory Network
  7. Post Transcriptional Regulation
    1. RNA Folding Aneesh Vaman Kulkarni
    2. siRNA and miRNA
  8. Proteomics
    1. Protein Structure Prediction
    2. Molecular Dynamics
    3. Mass Spectrophotometry and Protein Interaction Networks Brandon Bartch
  9. Genome Variations
    1. SNPs, CNVs, and SNP chip James Cronican + David Tse SNPs and Association Studies
    2. Association Studies and Haplotype Inference Stephen Yee + Kristi Fenstermacher Haplotype Inference and SNP Chip

 

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